opened file and stored content in array 
intialized variables unique 

entered for loop 
trying to perform 1 if 
ref|XP_473071.1|-->OSJNBa0014K14.2 [Oryza sativa (japonica cultivar-group)] emb|CAE02929.3| OSJNBa0014K14.1 [Oryza sativa (japonica cultivar-group)]
ref|XP_473071.1|-->OSJNBa0014K14.2 [Oryza sativa (japonica cultivar-group)] emb|CAE02929.3| OSJNBa0014K14.1 [Oryza sativa (japonica cultivar-group)]
Seq:     746  WRWRWRWW  753
Seq:     744  WRWRWRW  750
increased variables 

entered for loop 
trying to perform 1 if 
ref|XP_473071.1|-->OSJNBa0014K14.2 [Oryza sativa (japonica cultivar-group)] emb|CAE02929.3| OSJNBa0014K14.1 [Oryza sativa (japonica cultivar-group)]
dbj|BAD87001.1|-->hypothetical protein [Oryza sativa (japonica cultivar-group)] dbj|BAD86933.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Seq:     744  WRWRWRW  750
Seq:     51  WRWRWRWW  58
increased variables 

entered for loop 
trying to perform 1 if 
ref|XP_473071.1|-->OSJNBa0014K14.2 [Oryza sativa (japonica cultivar-group)] emb|CAE02929.3| OSJNBa0014K14.1 [Oryza sativa (japonica cultivar-group)]
dbj|BAD87001.1|-->hypothetical protein [Oryza sativa (japonica cultivar-group)] dbj|BAD86933.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Seq:     51  WRWRWRWW  58
Seq:     49  WRWRWRW  55
increased variables